scanpy.datasets.moignard15

Contents

scanpy.datasets.moignard15#

scanpy.datasets.moignard15()[source]#

Hematopoiesis in early mouse embryos [Moignard et al., 2015].

The data was obtained using qRT–PCR. X contains the normalized dCt values from supp. table 7 of the publication.

obs["exp_groups"] contains the stages derived by flow sorting and GFP marker status: “primitive streak” (PS), “neural plate” (NP), “head fold (HF), “four somite” blood/GFP⁺ (4SG), and “four somite” endothelial/GFP¯ (4SFG).

Return type:

AnnData

Returns:

Annotated data matrix.

Examples

>>> import scanpy as sc
>>> sc.datasets.moignard15()
AnnData object with n_obs × n_vars = 3934 × 42
    obs: 'exp_groups'
    uns: 'iroot', 'exp_groups_colors'
Contents