scanpy.datasets.krumsiek11

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scanpy.datasets.krumsiek11#

scanpy.datasets.krumsiek11()[source]#

Simulated myeloid progenitors [Krumsiek et al., 2011].

The literature-curated boolean network from Krumsiek et al. [2011] was used to simulate the data. It describes development to four cell fates annotated in obs["cell_type"]: “monocyte” (Mo), “erythrocyte” (Ery), “megakaryocyte” (Mk) and “neutrophil” (Neu).

See also the discussion of this data in Wolf et al. [2019].

Simulate via sim().

Return type:

AnnData

Returns:

Annotated data matrix.

Examples

>>> import scanpy as sc
>>> sc.datasets.krumsiek11()
UserWarning: Observation names are not unique. To make them unique, call `.obs_names_make_unique`.
    utils.warn_names_duplicates("obs")
AnnData object with n_obs × n_vars = 640 × 11
    obs: 'cell_type'
    uns: 'iroot', 'highlights'
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