scanpy.pl.MatrixPlot.make_figure

MatrixPlot.make_figure()

Renders the image but does not call matplotlib.pyplot.show(). Useful when several plots are put together into one figure.

See also

show(): Renders and shows the plot. savefig(): Saves the plot.

Examples

>>> import scanpy as sc
>>> import matplotlib.pyplot as plt
>>> adata = sc.datasets.pbmc68k_reduced()
>>> markers = ['C1QA', 'PSAP', 'CD79A', 'CD79B', 'CST3', 'LYZ']
>>> fig, (ax0, ax1) = plt.subplots(1, 2)
>>> sc.pl.MatrixPlot(adata, markers, groupby='bulk_labels', ax=ax0) \
...     .style(cmap='Blues', edge_color='none').make_figure()
>>> sc.pl.DotPlot(adata, markers, groupby='bulk_labels', ax=ax1).make_figure()