scanpy.pp.recipe_seurat

scanpy.pp.recipe_seurat(adata, *, log=True, plot=False, copy=False)

Normalization and filtering as of Seurat [Satija et al., 2015].

This uses a particular preprocessing.

Expects non-logarithmized data. If using logarithmized data, pass log=False.

Parameters:

adata AnnData

Annotated data matrix.

log bool (default: True)

Logarithmize data?

plot bool (default: False)

Show a plot of the gene dispersion vs. mean relation.

copy bool (default: False)

Return a copy if true.

Return type:

AnnData | None