scanpy.Preset

class scanpy.Preset(*values)

Bases: StrEnum

Presets for scanpy.settings.preset.

See properties below for details.

Members

ScanpyV1 = 'scanpy-v1'

Scanpy 1.*’s default settings.

ScanpyV2Preview = 'scanpy-v2-preview'

Scanpy 2.*’s feature default settings. (Preview: subject to change!)

Attributes

highly_variable_genes	Flavor for highly_variable_genes().
pca	Settings for pca().
rank_genes_groups	Correlation method for rank_genes_groups().
scale	Flavor for scale().
score_genes	Settings for score_genes().
leiden	Flavor for leiden().

Methods

override(preset)

Temporarily override scanpy.settings.preset.