scanpy.datasets.visium_sge¶
-
scanpy.datasets.
visium_sge
(sample_id='V1_Breast_Cancer_Block_A_Section_1')¶ Processed Visium Spatial Gene Expression data from 10x Genomics. Database: https://support.10xgenomics.com/spatial-gene-expression/datasets
- Parameters
- sample_id : {‘V1_Breast_Cancer_Block_A_Section_1’, ‘V1_Breast_Cancer_Block_A_Section_2’, ‘V1_Human_Heart’, ‘V1_Human_Lymph_Node’, ‘V1_Mouse_Kidney’, ‘V1_Adult_Mouse_Brain’, ‘V1_Mouse_Brain_Sagittal_Posterior’, ‘V1_Mouse_Brain_Sagittal_Posterior_Section_2’, ‘V1_Mouse_Brain_Sagittal_Anterior’, ‘V1_Mouse_Brain_Sagittal_Anterior_Section_2’}
Literal
[‘V1_Breast_Cancer_Block_A_Section_1’, ‘V1_Breast_Cancer_Block_A_Section_2’, ‘V1_Human_Heart’, ‘V1_Human_Lymph_Node’, ‘V1_Mouse_Kidney’, ‘V1_Adult_Mouse_Brain’, ‘V1_Mouse_Brain_Sagittal_Posterior’, ‘V1_Mouse_Brain_Sagittal_Posterior_Section_2’, ‘V1_Mouse_Brain_Sagittal_Anterior’, ‘V1_Mouse_Brain_Sagittal_Anterior_Section_2’] (default:'V1_Breast_Cancer_Block_A_Section_1'
) The ID of the data sample in 10x’s spatial database.
- sample_id : {‘V1_Breast_Cancer_Block_A_Section_1’, ‘V1_Breast_Cancer_Block_A_Section_2’, ‘V1_Human_Heart’, ‘V1_Human_Lymph_Node’, ‘V1_Mouse_Kidney’, ‘V1_Adult_Mouse_Brain’, ‘V1_Mouse_Brain_Sagittal_Posterior’, ‘V1_Mouse_Brain_Sagittal_Posterior_Section_2’, ‘V1_Mouse_Brain_Sagittal_Anterior’, ‘V1_Mouse_Brain_Sagittal_Anterior_Section_2’}
- Return type
- Returns
Annotated data matrix.