scanpy.external.pl.sam
- scanpy.external.pl.sam(adata, projection='X_umap', c=None, cmap='Spectral_r', linewidth=0.0, edgecolor='k', axes=None, colorbar=True, s=10.0, **kwargs)
Scatter plot using the SAM projection or another input projection.
- Parameters
- projection :
str|ndarrayUnion[str,ndarray] (default:'X_umap') A case-sensitive string indicating the projection to display (a key in adata.obsm) or a 2D numpy array with cell coordinates. If None, projection defaults to UMAP.
- c :
str|ndarray|NoneUnion[str,ndarray,None] (default:None) Cell color values overlaid on the projection. Can be a string from adata.obs to overlay cluster assignments / annotations or a 1D numpy array.
- axes :
Axes|NoneOptional[Axes] (default:None) Plot output to the specified, existing axes. If None, create new figure window.
- kwargs :
AnyAny all keyword arguments in matplotlib.pyplot.scatter are eligible.
- projection :
- Return type